I just rebuild my 1990 gmc 4.3 v6 engine and now my heater only blows warm air when befor the rebuild it blew hot I've replaced the water pump thermostat and the heater core was checked I just can't figure it out

did you check your radiator to see if it needs to be replaced?
If it is the original my be clogged.
the no heat did you check the flapper door and dash control to see if they are working?

When the coolant in the heater core is hot from the engine and your fan is on hot air will blow through the hot fan coil, i figured it out, when i stepped on the gas i could here the coolant squeezing by the control or limiter valve, because the higher rpms make the belt spin faster which makes the water pump pump harder causing more pressure, so when u idle that hot coolant will cool down from the fan blowing on it, u need to find the control valve and open it up to full blast, then hot coolant will always be flowing through your heater coil. ;)

I've had this problem. 2000 GMC uses a closed coolant system. Meaning takes and returns coolant from and to the Reserve Bottle and has little air in the engine and heater systems.
If everything appears ok but no heat. "Air Lock" is the most likely cause. (With interior heater set to full heat) Solution; 1. Make sure water pump works. 2. Drain about 1/2 engine coolant into container. 3 Remove both heater hoses from engine side and flush heater core in both directs through heater hoses with garden hose. 4. Reattach heater hoses in correct locations. 4. Refill engine with coolant. 5 Start engine and run for 2 min., use caution when topping up coolant.
6. Most 2000 GMC have twist off caps with plugs located mid way on heater hoses. with engine cold, start engine these caps may be loosened to allow trapped air to escape. Do not attempt with engine hot due to hot coolant injuries. This may take more than one attempt to remove all air from heat system. 7. Lastly most 2000 GMC water pumps have a bleeder plug,( 3/8" square driver plug) located on the water pump. With egine cold this plug should be removed to remove any air. Reinstall plug with thread sealant.
Hope this helps cheers

UNHOOK BOTH HEATER HOSES AND FLUSH OUT HEATER CORE
DO IT FOWARD AND BACK FLUSH / COVER DIST. CAP OR YOU WILL
FILL IT WITH WATER / IF IT CLEARS OUT HOOK HOSES BACK UP AND
BLEED AIR OUT OF SYSTEM / IF IT DOES'T CLEAR OUT HEATER CORE
WILL NEED TO BE REPLACED (DASH COMES OUT TO DO HEATER CORE)

a little tip is to "vent" the topmost hot hose whith the engine running to clear any trapped air in system.....loosen the clip,whilst under pressure,wear rubber bloves cos it bloody hot.......

First you have to identify what causes the problem.
To do this you have to:
1) When engine is cold check the level of coolant. If it is low fill it up.
2) Start engine and check if engine reaches regular temperature. If your engine is not heated enough it means your thermostat does not work properly and should be replaced.
3) If engine temperature is normal, then check the temperature of pipes that go to/from heater core. These pipes are located up the fire wall (easier access is from the passenger side). If pipe/pipes are cold (even engine is worm) it means you heater core is plugged and should be flushed. Keep in mind, flushing the whole cooling system is different from flushing heater core.
4) If pipe/pipes are hot/warm, turn off the fan, switch controller to the hot position, wait for 3-4 minutes and turn on the fan. Note if the cold air blows first or warm air blows first but it cools down in 5-10 seconds. If the air blows cold than it is most probably the problem with blend door or blend door actuator.
5) If air blows warm first and then cools down, then while running engine and remaining the transmission in PARKING position, press on the gas pedal until your engine reaches 3,000 RPM. Check if your heater blows warm/hot air. If it does, then your water pump does not work properly and should be replaced. If the air still cold, I would suggest to flush the heater core.

It is most probably the problem with blend door or blend door actuator. But just in case I would suggest to follow the entire procedure:

First you have to identify what causes the problem.
To do this you have to:
1) When engine is cold check the level of coolant. If it is low fill it up.
2) Start engine and check if engine reaches regular temperature. If your engine is not heated enough it means your thermostat does not work properly and should be replaced
3) If engine temperature is normal, then check the temperature of pipes that go to/from heater core. These pipes are located up the fire wall (easier access is from the passenger side). If pipe/pipes are cold (even engine is warm) it means you heater core is plugged and should be flushed. Keep in mind, flushing the whole cooling system is different from flushing heater core.
4) If pipe/pipes are hot/warm, turn off the fan, switch controller to the hot position, wait for 3-4 minutes and turn on the fan. Note if the cold air blows first or warm air blows first but it cools down in 5-10 seconds. If the air blows cold than it is most probably the problem with blend door or blend door actuator.
5) If air blows warm first and then cools down, then while running engine and remaining the transmission in PARKING position, press on the gas pedal until your engine reaches 3,000 RPM. Check if your heater blows warm/hot air. If it does, then your water pump does not work properly and should be replaced. If the air still cold, I would suggest flushing the heater core.

First you have to identify what causes the problem.
To do this you have to:
1) When engine is cold check the level of coolant. If it is low fill it up.
2) Start engine and check if engine reaches regular temperature. If your engine is not heated enough it means your thermostat does not work properly and should be replaced.
3) If engine temperature is normal, then check the temperature of pipes that go to/from heater core. These pipes are located up the fire wall (easier access is from the passenger side). If pipe/pipes are cold (even engine is warm) it means you heater core is plugged and should be flushed. Keep in mind, flushing the whole cooling system is different from flushing heater core.
4) If pipe/pipes are hot/warm, turn off the fan, switch controller to the hot position, wait for 3-4 minutes and turn on the fan. Note if the cold air blows first or warm air blows first but it cools down in 5-10 seconds. If the air blows cold than it is most probably the problem with blend door or blend door actuator.
5) If air blows warm first and then cools down, then while running engine and remaining the transmission in PARKING position, press on the gas pedal until your engine reaches 3,000 RPM. Check if your heater blows warm/hot air. If it does, then your water pump does not work properly and should be replaced. If the air still cold, I would suggest flushing the heater core.

I think you are on top of your problem,,you dont need any one elses advice.
Complete rebuild of the cooling and heating system,, simple.

Disconnect the heater hoses from the water pump and the intake manifold. Get a compressor and blow out the hose (put the air hose into the the hose that came off the mainfold. then flush the system and replace the antifreeze.