I have the same exact truck as you do and had a similar problem awhile ago when i installed the hypertech system. I had to uninstall the hypertech and then have a buddy (cause i did not know how) drain the residual power from the brain... apparenlty the brain houses a small amount of power and remembers these codes so after you turn off your truck...poof there they are again. This worked for me, but then I had other electrical problems so I the dealership had to replace the brain.
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