If you reinstall QuickBooks, you shouldn't lose any data that you've already converted, however, it would be a good idea to backup any company data you have transferred. If sounds like there was a corruption in the data transfer process though in which case you need to restore the original data and then try it again. You might want to reinstall the original software, open the company file(s) you are having troubles with and verify the integrity of those files before going through the upgrade process.
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how do I install QuickBooks 2006 on my Windows 7 laptop?
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