The half-way cord is the clue. Read up on unbalanced and balanced lines and TRS connectors.
One of these requires TRS connections and the signal is being carried on the RING of the TIP-RING-SLEEVE connector. Plugging in half-way the TIP touches the ring pickup contact. The emgs one MAY use TRS type cables and there may be a reason the signal and hot of these are reversed. If I could find schematics on all this equipment I could unravel the exact cause. You could make an adapter with a Stereo 1/4 inch plug and a 1/4 inch jack by wiring it to swap the tip and ring between them to use for connecting to the emgs guitar. ALSO verify you are using the SAME type guitar cable for both.OFTEN a TRS cable will NOT turn on the electronics when plugged into a guitar. Use an unbalanced instrument cable unless you have the XLR type output. Use of an adapter from the XLR type cable into the Boss will usually not work.
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